CDS

Accession Number TCMCG065C30012
gbkey CDS
Protein Id XP_004981451.1
Location complement(join(3330997..3331765,3331988..3332064,3332749..3332824,3332913..3333017,3333100..3333251,3333399..3333473,3333555..3333595,3333721..3333797,3333895..3334023,3334644..3334714,3335753..3336028,3336539..3336625,3337700..3337777,3337881..3338045,3338183..3338317,3338456..3338518,3338598..3338717,3338812..3339003,3339082..3339158,3339242..3339344,3339431..3339637))
Gene LOC101776459
GeneID 101776459
Organism Setaria italica

Protein

Length 1024aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004981394.4
Definition 5'-3' exoribonuclease 4 isoform X1 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category AL
Description XRN 5'-3' exonuclease N-terminus
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
ko03016        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K12619        [VIEW IN KEGG]
ko:K20553        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03008        [VIEW IN KEGG]
ko03018        [VIEW IN KEGG]
ko04016        [VIEW IN KEGG]
map03008        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
map04016        [VIEW IN KEGG]
GOs GO:0000291        [VIEW IN EMBL-EBI]
GO:0000902        [VIEW IN EMBL-EBI]
GO:0000932        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004534        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005844        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008409        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009266        [VIEW IN EMBL-EBI]
GO:0009408        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009653        [VIEW IN EMBL-EBI]
GO:0009826        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010087        [VIEW IN EMBL-EBI]
GO:0010286        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010494        [VIEW IN EMBL-EBI]
GO:0010586        [VIEW IN EMBL-EBI]
GO:0010587        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016049        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0031086        [VIEW IN EMBL-EBI]
GO:0031087        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032989        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034605        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0035770        [VIEW IN EMBL-EBI]
GO:0036464        [VIEW IN EMBL-EBI]
GO:0040007        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048589        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0048869        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051301        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0060560        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070370        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGGAGTCCCGGCGTTCTACCGGTGGCTGGCGGACCGCTACCCGCTGACGGTGTCGGACGCGGAGGAGGAGGAGCCCGTGGAGCTCGAGCCCGGCGCCTTCGTCCCCGTCGACCTCCGCCGCCCCAACCCCAACGGCATCGAGTTTGACAACCTCTACCTCGACATGAATGGCATCATTCACCCCTGCTTCCACCCCGAAGGCCGGCCGGCGCCCACCACCTATGACGAGGTGTTCAAGTCGATTTTTGATTACATCGACCACCTCTTCGGCCTCGTCCGCCCCAGGAAGCTCCTCTACATGGCCATTGATGGTGTTGCTCCAAGGGCAAAAATGAATCAGCAGAGGTCCAGGCGATTCCGGGCTGCAAAGGACGCAGCTGATGCGGCAGCCGAGGAGGAGAGGCTGAGGAAGGAATTTGAGGCAGAGGGTAGGACTCTAGCCCAGAAGGAGAAGTCAGAGGCAATCGACTCGAATGTCATTACTCCCGGGACGCAGTTCATGTTTGTACTATCTACGGCGCTTCAGTACTACATACAACTGAGATTGAATCATACACTTGGATGGCAGTCTGTCAAGGTAATATTGTCTGATTCCAATGTCCCTGGTGAGGGAGAGCACAAAATTATGTCATACATCCGCCTGCAGCGCAATCTTCCTGGCTTTGATCCCAATACACGTCATTGCTTATATGGCCTGGATGCTGATTTGATTATGCTTGCTCTGGCAACTCACGAGGTCCACTTCTCAATTTTAAGAGAGGTGATCTCCATGCCAGGGCAACAAGAAAAATGTTTCCTGTGCGGTCAAGTTGGGCATTTGGCTGCTGAATGCAGAGGCCCTAGCCAGGTTGATAGTGCTGTGGAGCTACCTCCTATCCATAAAAAGAAATACCAGTTTCTTCACATATGGGTGTTGCGTGAATACCTGGCAAAGGATTTGGAAATTGTAGATGCTCCATTCAAGATAAACTTTGAACGGCTTATCGATGATTTTGTGTTTATGTGTTTCTTTGTTGGCAACGACTTTCTGCCTCACATGCCGACTTTGGAAATTCGTGAGGGTGCCATTAATCTTCTGATGAGTATCTACAGGGCAGAGTTCATATCAATGGGTGGTTACCTGACCGATGGGGGCGAGGTTGTATTGGACCGTGTGGAACATTTCATTCAGTCCGTTGCTTTCAATGAAGAACAAATTTTCCAGAAACGTGCACGCATTCAACAGGCACGCGAGAACAATGAAGAGAGAAACAAAATACAGAGAGAAAGTACCGAGGAGAATCAATATGTGGACAAGGTCTGTTTTTCCCATAAAATTTCTGAATATGTTTGTTCAGTAATGTCTCTGATGATTGTAAGTATGAAAATTGTTTGCTGTCCCTCATTCTCTTTCTACCTTCAGGTCAAGTTAGGAGAGCCAGGATACAGGGAGCGGTACTATGCTGAAAAGTTTAAAGAAGAGGCAGAATCAAAACCCATTGATCAAGTTCGGAGAGATGTCGTCCAGAAATATGTGGAAGGTCTTTGCTGGGTTATGAGATACTACTATCAAGGTGTTTGTTCATGGCAGTGGTTCTATCCATATCATTATGCGCCTTTTGCATCTGACCTAAAAGACTTGGCTGAATTGGAGATTACCTTTTTCTTGGGTCAACCTTTCAAGCCATTTGATCAGCTTATGGGAACACTACCAGCTGCCAGCTCCAATGCACTGCCAAAGTACTATGGGGATTTAATGACTGATCCAAATTCACCTTTGAAGTCTTTCTATCCCAAAGATTTTGAGATAGACATGAATGGAAAACGTTTTGCATGGCAGGGTGTTGCAAAGTTACCTTTTATTGATGAAACACGTCTGCTTGCCGAAACAAGAAAACTAGAAGATACATTGACAGAAGAAGAGAAATTCAGGAACACGACAATGTTTGACATAATATATGTTCGGGAAACTCATCCATTGACTGCTCAGATTGCGTTCCTGTATCGGATGTACAACCATCTACCAAGAACAGATCCTTATGTTATTCCCATTGATCCTGCTGCTAGTGGTGGAATGAATGGGTTCCTTTGTTTATCTGAAAGGAACTGGTATAGCATCACTGTAACATCTCCAGTTAAGTGCTTCAACGGCATTGCCCAAAACAGAGTTTTGAATGCTACGTATCTTAATCCTCAGTATCACAAACACATCCCGGAGCCCCCAGTGGGGGTCATCGTACCTGGGAAGATATTGAAGCCTAGTGATTTCAAACCCTTTCCTGTGTTGTGGCATGAAGATAATAGTCGTCGGCAAGCAAGAGAAAGGCCTCAGGTTTCTGGAGCTTTGTCAGGTTCTCTCTTAGGACAAGCTGCACACCGTCTGGTGAAAAACTCCCTTCAGATCAAATCTGGTAGCGCTGCTGGGCTACTTGAGATGCCATATAGAGGTGCACCCTATGGCCCTGGAAACAGACCAAGGCCTGCTGGACCATTGGGATATGAGAGGGGTTTTGTGGACAACCCACACCATGCACACACGTCCAGAAGTGTCCCGAACTCTCATCCTCAGTTCTTTGGTGATGCTCAAGCTAACAGACAGCCTATGCGGATACTGGAACGTCCAAACTCCGGAAGCCATGAAGCTGGTATCCATGCATCAATGTCAAAACTGACAATCCATGAAGGGCCAAGGCTTCATCAGAATAACAGGATGCAGAATTCCGGGTACTGGCCCAACCAACCACATCCTAATCACTATGCTGGACCCCCACCTCAGCAGCCTATGCAGAATATCAGTTTCACACCTCAGCGGCCTTTCCAAACTGGAGGATTCCCGCAGCAGCGACCAGTAAATGGGGTTCCACCACCATTACCTCCCAGTAACTGGATTGGCAAGCAACCAACTGGAGGCCCCCCAGGTGTTCCTGCAAAGCATGATCCAAGGACAGCTCCGGATAGACAGCTTAAGCAGGATAACCCAAGATCGCAACAGGATAAGAGACAACAGGCTACCAAGGTATACCGTGTCAAAACCCAAGCTACTAATGGTAACGGTTTGTCAGAGTCAGGTAAACAGGAAGAACCCGCAGCATAA
Protein:  
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPVDLRRPNPNGIEFDNLYLDMNGIIHPCFHPEGRPAPTTYDEVFKSIFDYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKDAADAAAEEERLRKEFEAEGRTLAQKEKSEAIDSNVITPGTQFMFVLSTALQYYIQLRLNHTLGWQSVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVISMPGQQEKCFLCGQVGHLAAECRGPSQVDSAVELPPIHKKKYQFLHIWVLREYLAKDLEIVDAPFKINFERLIDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMSIYRAEFISMGGYLTDGGEVVLDRVEHFIQSVAFNEEQIFQKRARIQQARENNEERNKIQRESTEENQYVDKVCFSHKISEYVCSVMSLMIVSMKIVCCPSFSFYLQVKLGEPGYRERYYAEKFKEEAESKPIDQVRRDVVQKYVEGLCWVMRYYYQGVCSWQWFYPYHYAPFASDLKDLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKYYGDLMTDPNSPLKSFYPKDFEIDMNGKRFAWQGVAKLPFIDETRLLAETRKLEDTLTEEEKFRNTTMFDIIYVRETHPLTAQIAFLYRMYNHLPRTDPYVIPIDPAASGGMNGFLCLSERNWYSITVTSPVKCFNGIAQNRVLNATYLNPQYHKHIPEPPVGVIVPGKILKPSDFKPFPVLWHEDNSRRQARERPQVSGALSGSLLGQAAHRLVKNSLQIKSGSAAGLLEMPYRGAPYGPGNRPRPAGPLGYERGFVDNPHHAHTSRSVPNSHPQFFGDAQANRQPMRILERPNSGSHEAGIHASMSKLTIHEGPRLHQNNRMQNSGYWPNQPHPNHYAGPPPQQPMQNISFTPQRPFQTGGFPQQRPVNGVPPPLPPSNWIGKQPTGGPPGVPAKHDPRTAPDRQLKQDNPRSQQDKRQQATKVYRVKTQATNGNGLSESGKQEEPAA